“The CSO Classifier: Ontology-Driven Detection of Research Topics in Scholarly Articles” is a full paper submitted to the TPDL 2019: 23rd International Conference on Theory and Practice of Digital Libraries, 9-12 September 2019 OsloMet – Oslo Metropolitan University, Oslo, Norway
This paper was also nominated for the Best Paper Award, see here: http://www.tpdl.eu/tpdl2019/awards/
Angelo A. Salatino, Francesco Osborne, Thiviyan Thanapalasingam, Enrico Motta
Classifying research papers according to their research topics is an important task to improve their retrievability, assist the creation of smart analytics, and support a variety of approaches for analysing and making sense of the research environment. In this paper, we present the CSO Classifier, a new unsupervised approach for automatically classifying research papers according to the Computer Science Ontology (CSO), a comprehensive ontology of research areas in the field of Computer Science. The CSO Classifier takes as input the metadata associated with a research paper (title, abstract, keywords) and returns a selection of research concepts drawn from the ontology. The approach was evaluated on a gold standard of manually annotated articles yielding a significant improvement over alternative methods.
The CSO Classifier is a novel application that takes as input the text from abstract, title, and keywords of a research paper and outputs a list of relevant concepts from CSO. It consists of two main components: (i) the syntactic module and (ii) the semantic module. Figure 1 depicts its architecture. The syntactic module parses the input documents and identifies CSO concepts that are explicitly referred in the document. The semantic module uses part-of-speech tagging to identify promising terms and then exploits word embeddings to infer semantically related topics. Finally, the CSO Classifier combines the results of these two modules and enhances them by including relevant super-areas.
Download paper (from ORO): link
Download paper (from DOI): link
Slides of the talk
We published on Slideshare the slides used during the talk at TPDL.
— Thanasis Vergoulis (@vergoulis) September 11, 2019
We built our gold standard by asking 21 domain experts to classify 70 papers in terms of topics drawn from the CSO ontology.
We queried the MAG dataset and selected the 70 most cited papers published in 2007-2017 within the fields of “Semantic Web”, “Natural Language Processing”, and “Data Mining”. We then contacted 21 researchers in these fields at various levels of seniority and asked each of them to annotate 10 of these papers. We structured the data collection in order to have each paper annotated by at least three experts, using the majority vote to address disagreements. The papers were randomly assigned to experts, while minimising the number of shared papers between each pair of experts.
The Gold Standard is JSON file containing a dictionary of 70 items (papers). Each item has a 32 alphanumerical characters key representing the id of the paper and its value is also a dictionary structured as shown in the following tables.
|“doi”||string||DOI of the paper|
|“title”||string||title of the paper|
|“abstract”||string||abstract of the paper|
|“doc_type”||string||type of document, it identifies whether it is a conference paper, or journal, or others|
|“topics”||list||Fields of Science identified by Microsoft Academic Graph. This information is not used during the process of classification.|
|“source”||string||Source topic, whether it comes from the field of “Semantic Web”, “Natural Language Processing”, or “Data Mining”|
|“citations”||numerical||Number of citation at the time of download|
|“gold_standard”||dictionary||an object containing the information obtained by the experts and the generated gold standard ( specifications)|
|“cso_output”||dictionary||an object containing the output of the CSO Classifier ( specifications)|
|“relevant_rater_A”||list||relevant topics selected by the first expert during the annotation process|
|“relevant_rater_B”||list||relevant topics selected by the second expert during the annotation process|
|“relevant_rater_C”||list||relevant topics selected by the third expert during the annotation process|
|“majority_vote”||list||set of topics selected using the majority vote approach over the relevant topics chosen by the experts|
|“enhancement_majority_vote”||list||set of enhanced topics of the majority vote set|
|“syntactic”||list||list of topics returned by the syntactic module|
|“semantic”||list||list of topics returned by the semantic module|
|“enhancement”||list||list of enhanced topics from the union of the result of semantic and syntactic module|
|“final”||list||the final set of topics from the CSO Classifier|
Download Gold Standard (74KB): link
The Python implementation of the CSO Classifier is available through our Github repository: Go to Github repo
Or you can simply install the package by running:
pip install cso-classifier
We applied the word2vec approach to a collection of text from the Microsoft Academic Graph (MAG) for generating word embeddings. We first downloaded titles, and abstracts of 4,654,062 English papers in the field of Computer Science. Then we pre-processed the data by replacing spaces with underscores in all n-grams matching the CSO topic labels (e.g., “digital libraries” became “digital_libraries”) and for frequent bigrams and trigrams (e.g., “highest_accuracies”, “highly_cited_journals”). Finally, we trained the word2vec model using the parameters provided in the following table. The parameters were set to these values after testing several combinations.
Download Word2vec model (299MB): link
Here are the pseudocodes of both syntactic and semantic modules:
Use the CSO Classifier in other domains of Science
In order to use the CSO Classifier in other domains of Science, it is necessary to replace the two external sources mentioned in the previous section. In particular, there is a need for a comprehensive ontology or taxonomy of research areas, within the new domain, which will work as a controlled list of research topics. In addition, it is important to train a new word2vec model that fits the language model and the semantic of the terms, in this particular domain. In the next subsections, we will show how to integrate knowledge from other fields of Science within the CSO Classifier.
Further information is available in this blog post: How to use the CSO Classifier in other domains